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커뮤니티
연구자들이 자신의 연구와 전문성을 널리 알리고, 새로운 협력의 기회를 만들 수 있는 네트워킹 공간이에요.
논문 기본 정보
- 자료유형
- 학술저널
- 저자정보
- 발행연도
- 2020.5
- 수록면
- 663 - 673 (11page)
- DOI
- 10.7465/jkdi.2020.31.3.663
이용수
초록· 키워드
오류제보하기
A phylogenetic tree is a tree-like graphical representation of the evolutionary history of a group of organisms. An ultrametric tree is a phylogenetic tree scaled to time, which is estimated from DNA sequences of the organisms. PAUP* is a popular software used to estimate diverse types of phylogenetic trees including ultrametric trees. An ultrametric tree includes the lengths of edges which are the major parameters of interest, and PAUP* provides three ways to parameterize the edge lengths. In this work, analyses of simulated and real data were conducted to examine the performance of ultrametric tree estimations by PAUP*. The three parameterizations, called relAge, Thorne, and Rambaut, were found to be correctly estimated in most cases, although the relAge parameterization resulted in tree estimation with zero-length branches less often than others. The Rambaut parameterization had higher accuracy in the tree structure estimation in the simulation.
목차
Abstract
1. Introduction
2. Statistical evolutionary models
3. Simulation study
4. Real data analysis
5. Conclusion
References
참고문헌 (28)
참고문헌 신청
Altekar, G. / 2004 / Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference / Bioinformatics 3:407~415
An e, C. / 2007 / Bayesian estimation of concordance among gene trees / Molecular Biology and Evolution 24:412~426
정유진 / 2019 / Recent advances in Bayesian inference of isolation-with-migration models / Genomics & Informatics 17(4):37~37
Chung, Y. / 2017 / Bayesian analysis of evolutionary divergence with genomic data under diverse demographic models / Molecular Biology and Evolution 34:1517~1528
Felsenstein, J. / 1981 / Evolutionary trees from DNA sequences : A maximum likelihood approach / Journal of Molecular Evolution 17:368~376
An e, C. / 2007 / Bayesian estimation of concordance among gene trees / Molecular Biology and Evolution 24:412~426
정유진 / 2019 / Recent advances in Bayesian inference of isolation-with-migration models / Genomics & Informatics 17(4):37~37
Chung, Y. / 2017 / Bayesian analysis of evolutionary divergence with genomic data under diverse demographic models / Molecular Biology and Evolution 34:1517~1528
Felsenstein, J. / 1981 / Evolutionary trees from DNA sequences : A maximum likelihood approach / Journal of Molecular Evolution 17:368~376
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UCI(KEPA) : I410-ECN-0101-2020-041-000688707