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논문 기본 정보
- 자료유형
- 학술저널
- 저자정보
- 발행연도
- 2019.1
- 수록면
- 274 - 281 (8page)
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Pistacia chinensis Bunge has not only been used as a medicinal plant to treat various illnesses but its young shoots and leaves have also been used as vegetables. In addition, P. chinensis is used as a rootstock for Pistacia vera (pistachio). Here, the transcriptome of P. chinensis was sequenced to enrich genetic resources and identify secondary metabolite biosynthetic pathways using Illumina RNA-seq methods. De novo assembly resulted in 18,524 unigenes with an average length of 873 bp from 19 million RNA-seq reads. A Kyoto Encyclopedia of Genes and Genomes (KEGG) annotation tool assigned KO (KEGG orthology) numbers to 6,553 (36.2%) unigenes, among which 4,061 unigenes were mapped into 391 different metabolic pathways. For terpenoid backbone and carotenoid biosynthesis pathways, 44 and 22 unigenes encode enzymes corresponding to 30 and 16 entries, respectively. Twenty- two unigenes encode proteins for 16 entries of the carotenoid biosynthesis pathway. As for the phenylpropanoid and flavonoid biosynthesis pathways, 63 and 24 unigenes were homologous to 17 and 14 entry proteins, respectively. Mining of simple sequence repeat identified 2,599 simple sequence repeats from P. chinensis unigenes. The results of the present study provide a valuable resource for in-depth studies on comparative and functional genomics to unravel the underlying mechanisms of the medicinal properties of Pistacia L.
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참고문헌 (22)
참고문헌 신청
Naveed Akhtar / 2013 / Diversity and use of ethno-medicinal plants in the region of Swat, North Pakistan / Journal of Ethnobiology and Ethnomedicine 9(1):25
Doo Young Bae / 2018 / Enrichment of genomic resources and identification of simple sequence repeats from medicinally important Clausena excavata / 3 Biotech 8(3):1~10
Priya Batra / 2013 / Anti-cancer potential of flavonoids: recent trends and future perspectives / 3 Biotech 3(6):439~459
Bolger AM / 2014 / Trimmomatic: a flexible trimmer for Illumina sequence data / Bioinformatics 30(15):2114~2120
Bozorgi M / 2013 / Five Pistacia species (P. vera, P. atlantica, P. terebinthus, P. khinjuk, and P. lentiscus): a review of their traditional uses, phytochemistry, and pharmacology / The Scientific World Journal 2013:219815
Doo Young Bae / 2018 / Enrichment of genomic resources and identification of simple sequence repeats from medicinally important Clausena excavata / 3 Biotech 8(3):1~10
Priya Batra / 2013 / Anti-cancer potential of flavonoids: recent trends and future perspectives / 3 Biotech 3(6):439~459
Bolger AM / 2014 / Trimmomatic: a flexible trimmer for Illumina sequence data / Bioinformatics 30(15):2114~2120
Bozorgi M / 2013 / Five Pistacia species (P. vera, P. atlantica, P. terebinthus, P. khinjuk, and P. lentiscus): a review of their traditional uses, phytochemistry, and pharmacology / The Scientific World Journal 2013:219815
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