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논문 기본 정보
- 자료유형
- 학술저널
- 저자정보
- 발행연도
- 2019.1
- 수록면
- 213 - 222 (10page)
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Background As the transformation process can induce mutations in host plants, molecular characterization of the associated genomic changes is important not only for practical food safety but also for understanding the fundamental theories of genome evolution. Objectives To investigate a population-scale comparative study of the genome-wide spectrum of sequence variants in the transgenic genome with the variations present in 3000 rice varieties. Results On average, we identified 19,273 SNPs (including Indels) per transgenic line in which 10,729 SNPs were at the identical locations in the three transgenic rice plants. We found that these variations were predominantly present in specific regions in chromosomes 8 and 10. Majority (88%) of the identified variations were detected at the same genomic locations as those in natural rice population, implying that the transgenic induced mutations had a tendency to be common alleles. Conclusion Genomic variations in transgenic rice plants frequently occurred at the same sites as the major alleles found in the natural rice population, which implies that the sequence variations occur within the limits of a biological system to ensure survival.
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참고문헌 (50)
참고문헌 신청
Alexandrov N / 2015 / SNP-Seek database of SNPs derived from 3000 rice genomes / Nucleic Acids Res 43(Database):D1023~D1027
Amos W / 2010 / Even small SNP clusters are non-randomly distributed:is this evidence of mutational non-independence? / Proc Biol Sci 277:1443~1449
Justin E. Anderson / 2016 / Genomic variation and DNA repair associated with soybean transgenesis: a comparison to cultivars and mutagenized plants / BMC Biotechnology 16(1)
Arbeithuber B / 2015 / Crossovers are associated with mutation and biased gene conversion at recombination hotspots / Proc Natl Acad Sci USA 112:2109~2114
Bolger AM / 2014 / Trimmomatic: a flexible trimmer for Illumina sequence data / Bioinformatics 30:2114~2120
Amos W / 2010 / Even small SNP clusters are non-randomly distributed:is this evidence of mutational non-independence? / Proc Biol Sci 277:1443~1449
Justin E. Anderson / 2016 / Genomic variation and DNA repair associated with soybean transgenesis: a comparison to cultivars and mutagenized plants / BMC Biotechnology 16(1)
Arbeithuber B / 2015 / Crossovers are associated with mutation and biased gene conversion at recombination hotspots / Proc Natl Acad Sci USA 112:2109~2114
Bolger AM / 2014 / Trimmomatic: a flexible trimmer for Illumina sequence data / Bioinformatics 30:2114~2120
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